Protein structures
From BmrzWiki
NMR protein structures co-authored by BMRZ members.
|
Busche, A., Gottstein, D., Hein, C., Ripin, N., Pader, I., Tufar, P., Eisman, E. B., Gu, L. Walsh, C. T., Sherman, D. H., Löhr, F., Güntert, P. & Dötsch, V. Characterization of the interaction between an ACP domain and a halogenase in the curacin A polyketide synthetase. ACS Chem. Biol., published online ahead of print.
PDB 2LIU NMR restraints BMRB 17906 (holo-ACPI) |
|
He, F., Inoue, M., Kigawa, T., Takahashi, M., Kuwasako, K., Tsuda, K., Kobayashi, N., Terada, T., Shirouzu, M., Tanaka, A., Sugano, S., Güntert, P., Yokoyama, S. & Muto, Y. Solution structure of the Splicing Factor Motif (SFM) of the human Prp18 protein. Proteins 80, 968–974 (2012)
PDB 2DK4 NMR restraints BMRB 11355 |
|
Reckel, S., Gottstein, D., Stehle, J., Löhr, F., Verhoefen, M. K., Takeda, M., Silvers, R., Kainosho, M., Glaubitz, C., Wachtveitl, J., Bernhard, F., Schwalbe, H., Güntert, P. & Dötsch, V. Solution NMR structure of proteorhodopsin. Angew. Chem. Int. Ed. 50, 11942–11946 (2011)
PDB 2L6X NMR restraints BMRB 17327 |
|
Rozenknop, A., Rogov, V. V., Löhr, F., Güntert, P., Dikic, I., & Dötsch, V. Characterization of the interaction of GABARAPL-1 with the LIR motif of NBR1. J. Mol. Biol. 410, 477–487 (2011)
PDB 2L8J NMR restraints BMRB 17412 |
|
Schmöe, K., Rogov, V. V., Rogova, N. Y., Löhr, F., Güntert, P., Bernhard, F. & Dötsch, V. Structural insights into Rcs phosphotransfer: The newly identified RcsD-ABL domain enhances interaction with the response regulator RcsB. Structure 19, 577–587 (2011)
PDB 2KX7 NMR restraints |
|
Tsuda, K., Someya, T., Kuwasako, K., Takahashi, M., Fahu, H., Inoue, M., Harada, T., Watanabe, S., Terada, T., Kobayashi, N., Shirouzu, M., Kigawa, T., Tanaka, A., Sugano, S., Güntert, P., Yokoyama, S. & Muto, Y. Structural basis for the dual RNA-recognition modes of human Tra2-β RRM. Nucl. Acids Res. 39, 1538-1553 (2011)
PDB 2RRB NMR restraints |
|
Yamashita, S., Nagata, T., Kawazoe, M., Takemoto, C., Kigawa, T, Güntert, P., Kobayashi, N., Terada, T., Shirouzu, M., Wakiyama, M., Muto, Y. & Yokoyama, S. Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein. Protein Sci. 20, 118-130 (2011) |
|
Yamashita, S., Nagata, T., Kawazoe, M., Takemoto, C., Kigawa, T, Güntert, P., Kobayashi, N., Terada, T., Shirouzu, M., Wakiyama, M., Muto, Y. & Yokoyama, S. Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein. Protein Sci. 20, 118-130 (2011)
PDB 2CPN NMR restraints |
|
Handa, Y., Hikawa, Y., Tochio, N., Kogure, H., Inoue, M., Koshiba, S., Güntert, P., Inoue, Y., Kigawa, T., Yokoyama, S. & Nameki, N. Solution structure of the mitochondrial protein ICT1 that is essential for cell vitality. J. Mol. Biol. 404, 260-273 (2010)
PDB 1J26 |
|
Hamada, T., Matsunaga, S., Fujiwara, M., Fujita, K., Hirota, H., Schmucki, R., Güntert, P., Fusetani, N. Solution structure of polytheonamide B, a highly cytotoxic nonribosomal polypeptide from marine sponge. J. Am. Chem. Soc. 132, 12941–12945107 (2010)
PDB 2RQO NMR restraints |
|
He, F., Umehara, T., Saito, K., Harada, T., Watanabe, S., Yobuki, T., Kigawa, T., Takahashi, M., Kuwasako, K., Tsuda, K., Matsuda, T., Aoki, M., Seki, E., Kobayashi, N., Güntert, P., Yokoyama, S. & Muto, Y. Structural Insight into the Zinc Finger CW Domain as a Histone Modification Reader. Structure 18, 1127–1139 (2010)
PDB 2E61 NMR restraints |
|
Sobhanifar, S., Schneider, B., Löhr, F., Gottstein, D., Ikeya, T., Filipek, S., Güntert, P., Bernhard, F. & Dötsch, V. Structural investigation of the C-terminal catalytic fragment of presenilin-1. Proc. Natl. Acad. Sci. USA 107, 9644–9649 (2010)
PDB 2KR6 NMR restraints |
|
Nozinovic, S., Fürtig, B., Jonker, H., Richter, C. & Schwalbe, H. High-resolution NMR structure of a RNA model system: the 14mer cUUCGg tetraloop hairpin RNA. Nucl. Acids Res., 38, 683-694 (2010)
PDB 2KOC NMR restraints |
|
Coutandin, D., Löhr, F., Niesen, F. H., Ikeya, T., Weber, T. A., Schäfer, B., Bullock, A. N., Yang, A., Güntert, P. , Knapp, S., McKeon, F., Der Ou, H. & Dötsch, V. Conformational stability and activity of p73 require a second helix in the tetramerization domain. Cell Death Diff. 16, 1582–1589 (2009)
PDB 2KBY NMR restraints |
|
He, F., Dang, W., Saito, K., Watanabe, S., Kobayashi, N., Güntert, P., Kigawa, T, Tanaka, A., Muto, Y. & Yokoyama, S. Solution structure of the cysteine-rich domain in Fn14, a member of the tumor necrosis factor receptor superfamily. Protein Sci. 18, 650–656 (2009)
PDB 2RPJ NMR restraints |
|
He, F., Saito, K., Kobayashi, N., Harada, T., Watanabe, S., Kigawa, T, Güntert, P., Unzai, S., Muto, Y. & Yokoyama, S. Structural and functional characterization of the NHR1 domain of the Drosophila Neuralized E3 ligase in the Notch signaling pathway. J. Mol. Biol. 393, 478-495 (2009)
PDB 2YUE NMR restraints |
|
Khayrutdinov, B. I., Bae, W. J., Yun, Y. M., Lee, J. H., Tsuyama, T., Kim, J. J., Hwang, E., Ryu, K. S., Cheong, H. K., Cheong, C., Ko, J. S., Enomoto, T., Karplus, P. A., Güntert, P., Tada, S., Jeon, Y. H., Cho, Y. Structure of the Cdt1 C-terminal domain: Conservation of the winged helix fold in replication licensing factors. Protein Sci. 18, 2252-2264 (2009)
PDB 2KLO NMR restraints |
|
Ohnishi, S. Pääkkönen, K., Koshiba, S., Tochio, N., Sato, M., Kobayashi, N., Harada, T., Watanabe, S., Muto, Y., Güntert, P., Tanaka, A., Kigawa, T. & Yokoyama, S. Solution structure of the GUCT domain from human RNA helicase II/Guβ reveals the RRM fold, but implausible RNA interactions. Proteins 74, 133–144 (2009)
PDB 2E29 |
|
Peroza, E. A., Schmucki, R., Güntert, P., Freisinger, E. & Zerbe O. The βE-domain of Wheat Ec-1 metallothionein: A metal-binding domain with a distinctive structure. J. Mol. Biol. 387, 207–218 (2009)
PDB 2KAK NMR restraints BMRB 16025 |
|
Rehm, S., Han, S., Hassani, I., Sokocevic, A., Jonker, HRA., Engels, JW. & Schwalbe, H., The High Resolution NMR Structure of Parvulustat (Z-2685) from Streptomyces parvulus FH-1641: Comparison with Tendamistat from Streptomyces tendae 4158. Chembiochem 10, 119-127 (2009)
PDB 2KER NMR restraints |
|
Sreeramulu, S., Jonker, HRA., Langer, T., Richter, C., Lancaster, CRD. & Schwalbe, H., The Human Cdc37 center dot Hsp90 Complex Studied by Heteronuclear NMR Spectroscopy. J. Biol. Chem., 3885-3896 (2009)
PDB 2K5B NMR restraints |
|
Tsuda, K., Kuwasako, K., Takahashi, M., Someya, T., Inoue, M., Terada, T., Kobayashi, N., Shirouzu, M., Kigawa, T., Tanaka, A., Sugano, S., Güntert, P., Muto, Y. & Yokoyama, S. Structural basis for the sequence specific RNA-recognition mechanism of human CUG-BP1 RRM3. Nucl. Acids Res. 37, 5151–5166 (2009)
PDB 2RQC NMR restraints |
|
Koglin, A., Löhr, F., Bernhard, F., Rogov, V. R., Frueh, D. P., Strieter, E. R., Mofid, M. R., Güntert, P., Wagner, G., Walsh, C. T., Marahiel, M. A. & Dötsch, V. Structural basis for the selectivity of the external thioesterase of the surfactin-synthetase. Nature 454, 907–911 (2008)
PDB 2RON NMR restraints (SrfTEII) |
|
Kuwasako, K., Dohmae, N., Inoue, M., Shirouzu, M., Taguchi, S., Güntert, P., Séraphin, B., Muto, Y. & Yokoyama, S. Complex assembly mechanism and an RNA-binding mode of the human p14-SF3b155 spliceosomal protein complex identified by NMR solution structure and functional analyses. Proteins 71, 1617–1636 (2008)
PDB 2FHO NMR restraints |
|
Kuwasako, K., Takahashi, M., Tochio, N., Abe, C., Tsuda, K., Inoue, M., Terada, T., Shirouzu, M., Kobayashi, N., Kigawa, T., Taguchi, S., Tanaka, A., Hayashizaki, Y., Güntert, P., Muto, Y. & Yokoyama, S. Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode. Biochemistry 47, 6437–6450 (2008)
PDB 2RNE |
|
Lin, Y. J., Umehara, T., Inoue, M., Saito, K., Kigawa, T., Jang, M. K., Ozato, K., Yokoyama, S., Padmanabhan, B., Güntert, P. Solution structure of the extraterminal domain of the bromodomain-containing protein BRD4. Protein Sci. 17, 2174–2179 (2008)
PDB 2JNSNMR restraints BMRB 15125 |
|
Nagata, T., Suzuki, S., Endo, R., Shirouzu, M., Terada, T., Inoue, M., Kigawa, T, Güntert, P., Hayashizaki, Y., Muto, Y. & Yokoyama, S. The RRM domain of poly(A)-specific ribonuclease (PARN) has a non-canonical binding site for mRNA cap analog recognition. Nucl. Acids Res. 36, 4754–4767 (2008)
PDB 1WHV (free form) |
|
Takeda, M., Chang, C. K., Ikeya, T., Güntert, P., Chang, Y. H., Hsu, Y. L., Huang, T. H. & Kainosho, M. Solution structure of the C-terminal dimerization domain of SARS coronavirus nucleocapsid protein determined by the SAIL-NMR method. J. Mol. Biol. 380, 608–622 (2008)
PDB 2JW8 NMR restraints BMRB 15511 |
|
Takeda, M., Sugimori, N., Torizawa, T., Terauchi, T., Ono, A. M., Yagi, H., Yamaguchi, Y., Kato, K., Ikeya, T., Güntert, P., Aceti, D. J., Markley, J. L. & Kainosho, M. Structure of the putative 32 kDa myrosinase binding protein from Arabidopsis (At3g16450.1) as determined by the SAIL-NMR method. FEBS J. 275, 5873–5884 (2008)
PDB 2JZ4 NMR restraints BMRB 15607 |
|
Taylor, A. B., Meyer, B., Leal, B. Z., Kottter, P., Schirf, V., Demeler, B., Hart, P. J., Entian, K. D. & Wohnert, J. The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site. Nucl. Acids Res. 36, 1542-1554 (2008) |
|
Yoshida, H., Furuya, N., Lin, Y. J., Güntert, P., Komano, T. & Kainosho, M. Structural basis of the role of the NikA ribbon-helix-helix domain in initiating bacterial conjugation. J. Mol. Biol. 384, 690–701 (2008) |
|
Der Ou, H., Löhr, F., Vogel, V., Mantele, W. & Dötsch, V. Structural evolution of C-terminal domains in the p53 family. EMBO J. 26, 3463-3473 (2007)
PDB 2RP4NMR restraints |
|
Jonker, H. R. A., Ilin, S., Grimm, S. K., Wohnert, J. & Schwalbe, H. L11 domain rearrangement upon binding to RNA and thiostrepton studied by NMR spectroscopy. Nucleic Acids Res. 35, 441-454 (2007)
PDB 2JQ7 |
|
Hwang, E., Ryu, K. S., Pääkkönen, K., Güntert, P., Cheong, H. K., Lim, D. S., Lee, J. O., Jeon, Y. H. & Cheong, C. Structural insight into dimeric interaction of the SARAH domains from Mst1 and RASSF family proteins in the apoptosis pathway. Proc. Natl. Acad. Sci. USA. 104, 9236–9241 (2007)
PDB 2JO8 NMR restraints |
|
Silvaggi, N. R., Martin, L. J., Schwalbe, H., Imperiali, B. & Allen, K. N. Double-lanthanide-binding tags for macromolecular crystallographic structure determination. J. Am. Chem. Soc. 129, 7114-7120 (2007)
PDB 2OJR |
|
Koglin, A., Mofid, M.R., Löhr, F., Schäfer, B., Rogov, V.V., Blum, M.M., Mittag, T., Marahiel, M.A., Bernhard, F., Dötsch, V. Conformational Switches Modulate Protein Interactions in Peptide Antibiotic Synthetases. Science, 312, 273-276 (2006) |
|
Ilin, S., Hoskins, A., Ohlenschläger, O., Jonker, H.R.A, Schwalbe, H., Wöhnert, J. Domain reorientation and induced fit upon RNA binding: solution structure and dynamics of ribosomal protein L11 from Thermotoga maritima. ChemBioChem, 6, 1611-1618 (2005)
PDB 2K3F NMR restraints
|
